Xrd profile fitting software

Industry is designed for industrial environments with push-button interface and extensive LIMS and automation capabilities. With the optional Walk-up Interface, multi-user environments are well supported. Quantify is a simplified version with 10 preprogrammed quantitative analysis modules. Our Industry software is designed for high-volume routine X-ray diffraction analysis in an industrial environment. Quantify is a stand-alone software for basic data acquisition and calibration-line based quantitative phase analysis.

Our HighScore family of powder diffraction software is designed to extract all phase information from your loose and pressed powders and other polycrystalline samples. The HighScore Plus option offers additional routines for crystallography, unlimited clustering and Rietveld analysis on top of all HighScore functionality.

HighScore, our powder diffraction software, can also be used for phase identification and depth profiling of phases in polycrystalline coatings. We support the widest variety of search-match databases for the ultimate performance in phase identification. With our thin film software modules, you can obtain detailed information on the thickness, composition, preferred orientation, epitaxial quality and residual stress present in layers. For polycrystalline layers and layer stacks, you can determine the phase composition, also as a function of depth, with our HighScore software, and determine the residual stresses with our Stress Plus software.

Our AMASS software suite offers all the functionalities you need to characterize your layered structures enabling fast and easy determination of key thin-film parameters. This is where domain knowledge comes in! Some things to know about profiles. The amplitude is always positive and never exceeds the max amplitude in the profile, the width is always positive and not extremely broad, and the mean is always between the domain. With this information we now have constraints that we can use to put bounds on our solution and initial guess.

We will use this information with lmfit. At this point I think it is time that we try to fit actual XRD data. We understand the method of fitting a profile. But the current method of constructing the optimization is tedious to say the least. As Raymond Hettinger always says there must be a better way!

Let's use a package designed exactly for this lmfit. You can easily install it via pip install lmfit. I think of lmfit as constructing a model that represents your data by adding together several functions. In our case these functions will be the gaussians , lorentzians , and voigt.

But lmfit is much more flexible than that see the available functions and you can even include your own as an arbitrary python function. Another issue that lmfit solves is mapping your function parameters to the optimization routine and adding complex constraints such as min, max, relationships between parameters, and fixed values. Notice how lmfit made the model construction much easier.

Using the domain knowledge that we have about XRD we can simplify the creation of these models greatly. This will setup default initial guesses, set bounds on variable values, and allow for a python dictionary as a spec.

Lets try the same problem that we have been working on. Again to show how there are multiple local optimums you will notice that this method does not always converge to the true solution.

The spec that we have defined in the code above will work for gaussians , lorentzians , and voigt. All parameters can be initialized via params and all hints can be supplied as hints.

I will show that in the final example. Finally here is our example XRD spectra. I will not show the actual data since my colleague would like to keep that for publication. But again here is the plot we are trying to fit. The data if from a very disordered sample due to irradiation. It is tedious to find all the peaks so lets write a function to help us assign initial values for guesses based on peaks.

XCrySDen XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfaces and contours, which can be superimposed on crystalline structures and interactively rotated and manipulated. Limited to the more frequent cases of higher symmetry, ie.

XmMol XmMol is a desktop macromolecular visualization and modeling tool designed to be easy to use, configure and enhance. Includes: interactive graphics of macromolecules, strong ability to be interfaced with external programs, some modelling tools and more.

XND Rietveld refinement program for real time powder diffraction patterns. The aim of the program is to provide an easy approach to the treatment of multiple diffraction patterns arising from a large number of physical and chemical problems as the study of phase transition and in the real time monitoring of reactions. Also includesprograms for multi-purpose data analysis and visualization.

XPACE Python script to store and analyse the outcome of the factorial designs of macromolecular crystallization experiments for X-ray diffraction. XPMA Mouse-driven menu-based graphical program for the manipulation of crystal structures.

XPowder This program can collect data from diffractometer from any kind of diffractometer , this software includes some analysis tools. Other minor programs are available. Xraydif1 Shareware version of theoretical, X-ray powder diffraction, profile simulator by Todd Warren Snyder. X-Ray Diffraction Simulator Provides a graphical user interface to a computer simulation of x-ray powder diffraction of two-dimensional crystals. X-Ray interaction with matter A number of X-ray calculations through a web form.

For instance: X-ray reflectivity, X-ray transmission. Hwang, J.